J3_8RPZ_017

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RPZ_017 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0885

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8RPZ|1|A|G|1424
8RPZ|1|A|G|1425
8RPZ|1|A|G|1426
8RPZ|1|A|A|1427
8RPZ|1|A|C|1428
8RPZ|1|A|G|1429
*
8RPZ|1|A|C|1564
8RPZ|1|A|C|1565
*
8RPZ|1|A|G|1568
8RPZ|1|A|A|1569
8RPZ|1|A|A|1570
8RPZ|1|A|A|1571
8RPZ|1|A|A|1572
8RPZ|1|A|G|1573
8RPZ|1|A|C|1574

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2