J3_8RQ0_012
3D structure
- PDB id
- 8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 8RQ0|1|A|A|504, 8RQ0|1|A|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RQ0_012 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0994
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8RQ0|1|A|G|30
8RQ0|1|A|C|31
*
8RQ0|1|A|G|474
8RQ0|1|A|C|475
8RQ0|1|A|G|476
8RQ0|1|A|A|477
8RQ0|1|A|A|478
8RQ0|1|A|A|479
8RQ0|1|A|A|480
8RQ0|1|A|G|481
8RQ0|1|A|A|482
8RQ0|1|A|A|483
8RQ0|1|A|C|484
*
8RQ0|1|A|G|496
8RQ0|1|A|A|497
8RQ0|1|A|G|498
8RQ0|1|A|U|499
8RQ0|1|A|G|500
8RQ0|1|A|A|501
8RQ0|1|A|A|502
8RQ0|1|A|A|503
8RQ0|1|A|A|504
8RQ0|1|A|A|505
8RQ0|1|A|G|506
8RQ0|1|A|A|507
8RQ0|1|A|A|508
8RQ0|1|A|C|509
8RQ0|1|A|C|510
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain Q
- Large ribosomal subunit protein bL20
- Chain S
- Large ribosomal subunit protein uL22
- Chain U
- Large ribosomal subunit protein uL24
- Chain y
- Apidaecins type 88
Coloring options: