3D structure

PDB id
8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
8RQ2|1|A|A|504, 8RQ2|1|A|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8RQ2_012 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.0994
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8RQ2|1|A|G|30
8RQ2|1|A|C|31
*
8RQ2|1|A|G|474
8RQ2|1|A|C|475
8RQ2|1|A|G|476
8RQ2|1|A|A|477
8RQ2|1|A|A|478
8RQ2|1|A|A|479
8RQ2|1|A|A|480
8RQ2|1|A|G|481
8RQ2|1|A|A|482
8RQ2|1|A|A|483
8RQ2|1|A|C|484
*
8RQ2|1|A|G|496
8RQ2|1|A|A|497
8RQ2|1|A|G|498
8RQ2|1|A|U|499
8RQ2|1|A|G|500
8RQ2|1|A|A|501
8RQ2|1|A|A|502
8RQ2|1|A|A|503
8RQ2|1|A|A|504
8RQ2|1|A|A|505
8RQ2|1|A|G|506
8RQ2|1|A|A|507
8RQ2|1|A|A|508
8RQ2|1|A|C|509
8RQ2|1|A|C|510

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain Q
Large ribosomal subunit protein bL20
Chain S
Large ribosomal subunit protein uL22
Chain U
Large ribosomal subunit protein uL24
Chain y
Apidaecins type 88

Coloring options:


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