J3_8RQ2_017

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RQ2_017 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0885

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8RQ2|1|A|G|1424
8RQ2|1|A|G|1425
8RQ2|1|A|G|1426
8RQ2|1|A|A|1427
8RQ2|1|A|C|1428
8RQ2|1|A|G|1429
*
8RQ2|1|A|C|1564
8RQ2|1|A|C|1565
*
8RQ2|1|A|G|1568
8RQ2|1|A|A|1569
8RQ2|1|A|A|1570
8RQ2|1|A|A|1571
8RQ2|1|A|A|1572
8RQ2|1|A|G|1573
8RQ2|1|A|C|1574

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2