J3_8RW1_005

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

8RW1|1|2|C|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RW1_005 not in the Motif Atlas

Homologous match to J3_8P9A_074

Geometric discrepancy: 0.0942

The information below is about J3_8P9A_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23895.2

Basepair signature

cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8RW1|1|2|A|880
8RW1|1|2|U|881
8RW1|1|2|C|882
8RW1|1|2|A|883
*
8RW1|1|2|U|927
8RW1|1|2|A|928
8RW1|1|2|A|929
8RW1|1|2|C|930
8RW1|1|2|U|931
8RW1|1|2|A|932
8RW1|1|2|C|933
8RW1|1|2|U|934
8RW1|1|2|G|935
*
8RW1|1|2|C|942
8RW1|1|2|A|943
8RW1|1|2|U|944
8RW1|1|2|U|945
8RW1|1|2|U|946

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain O

Small ribosomal subunit protein uS11

Chain a

40S ribosomal protein S26