J3_8RW1_010

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8RW1|1|2|A|1216, 8RW1|1|2|G|1443, 8RW1|1|2|C|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RW1_010 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1667

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8RW1|1|2|C|1214
8RW1|1|2|C|1215
8RW1|1|2|A|1216
8RW1|1|2|G|1217
8RW1|1|2|A|1218
8RW1|1|2|C|1219
*
8RW1|1|2|G|1262
8RW1|1|2|G|1263
8RW1|1|2|G|1264
8RW1|1|2|U|1265
8RW1|1|2|G|1266
*
8RW1|1|2|U|1440
8RW1|1|2|U|1441
8RW1|1|2|A|1442
8RW1|1|2|G|1443
8RW1|1|2|A|1444
8RW1|1|2|C|1445
8RW1|1|2|G|1446

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

KLLA0B08173p

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31