J3_8RW1_015
3D structure
- PDB id
- 8RW1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CACUG*CGUGCUGG*C(2MG)AG
- Length
- 17 nucleotides
- Bulged bases
- 8RW1|1|2|U|1471, 8RW1|1|2|G|1537
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RW1_015 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.1409
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8RW1|1|2|C|1468
8RW1|1|2|A|1469
8RW1|1|2|C|1470
8RW1|1|2|U|1471
8RW1|1|2|G|1472
*
8RW1|1|2|C|1531
8RW1|1|2|G|1532
8RW1|1|2|U|1533
8RW1|1|2|G|1534
8RW1|1|2|C|1535
8RW1|1|2|U|1536
8RW1|1|2|G|1537
8RW1|1|2|G|1538
*
8RW1|1|2|C|1569
8RW1|1|2|2MG|1570
8RW1|1|2|A|1571
8RW1|1|2|G|1572
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- KLLA0D10659p
- Chain S
- KLLA0B01562p
- Chain T
- KLLA0A07194p
- Chain Z
- 40S ribosomal protein S25
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