J3_8RXH_022

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGAUAGCGAACAAGUAG*CGAA(A2M)G*CUUG

Length

27 nucleotides

Bulged bases

8RXH|1|L1|U|383, 8RXH|1|L1|A|391, 8RXH|1|L7|U|22

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RXH_022 not in the Motif Atlas

Homologous match to J3_8P9A_045

Geometric discrepancy: 0.0703

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

8RXH|1|L1|C|380
8RXH|1|L1|G|381
8RXH|1|L1|A|382
8RXH|1|L1|U|383
8RXH|1|L1|A|384
8RXH|1|L1|G|385
8RXH|1|L1|C|386
8RXH|1|L1|G|387
8RXH|1|L1|A|388
8RXH|1|L1|A|389
8RXH|1|L1|C|390
8RXH|1|L1|A|391
8RXH|1|L1|A|392
8RXH|1|L1|G|393
8RXH|1|L1|U|394
8RXH|1|L1|A|395
8RXH|1|L1|G|396
*
8RXH|1|L1|C|403
8RXH|1|L1|G|404
8RXH|1|L1|A|405
8RXH|1|L1|A|406
8RXH|1|L1|A2M|407
8RXH|1|L1|G|408
*
8RXH|1|L7|C|20
8RXH|1|L7|U|21
8RXH|1|L7|U|22
8RXH|1|L7|G|23

Current chains

Chain L1

LSUa_rRNA_chain_1

Chain L7

5.8S_rRNA_chain_7

Nearby chains

Chain LC

Putative ribosomal protein L1a

Chain LW

Putative 60S ribosomal protein L26

Chain Lj

Ribosomal protein L37

Chain Ll

Putative 60S ribosomal protein L39