J3_8RXH_023
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- UUGAAAAG*CC*GA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RXH_023 not in the Motif Atlas
- Geometric match to J3_5J7L_036
- Geometric discrepancy: 0.1248
- The information below is about J3_5J7L_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
8RXH|1|L1|U|410
8RXH|1|L1|U|411
8RXH|1|L1|G|412
8RXH|1|L1|A|413
8RXH|1|L1|A|414
8RXH|1|L1|A|415
8RXH|1|L1|A|416
8RXH|1|L1|G|417
*
8RXH|1|L1|C|444
8RXH|1|L1|C|445
*
8RXH|1|L7|G|18
8RXH|1|L7|A|19
Current chains
- Chain L1
- LSUa_rRNA_chain_1
- Chain L7
- 5.8S_rRNA_chain_7
Nearby chains
- Chain LC
- Putative ribosomal protein L1a
- Chain LW
- Putative 60S ribosomal protein L26
- Chain Ll
- Putative 60S ribosomal protein L39
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