J3_8RXH_024
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- UUGAAAAGCAC*GAGUGAAAUAGAACC*GA
- Length
- 28 nucleotides
- Bulged bases
- 8RXH|1|L1|U|439, 8RXH|1|L1|A|443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RXH_024 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.3777
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8RXH|1|L1|U|410
8RXH|1|L1|U|411
8RXH|1|L1|G|412
8RXH|1|L1|A|413
8RXH|1|L1|A|414
8RXH|1|L1|A|415
8RXH|1|L1|A|416
8RXH|1|L1|G|417
8RXH|1|L1|C|418
8RXH|1|L1|A|419
8RXH|1|L1|C|420
*
8RXH|1|L1|G|431
8RXH|1|L1|A|432
8RXH|1|L1|G|433
8RXH|1|L1|U|434
8RXH|1|L1|G|435
8RXH|1|L1|A|436
8RXH|1|L1|A|437
8RXH|1|L1|A|438
8RXH|1|L1|U|439
8RXH|1|L1|A|440
8RXH|1|L1|G|441
8RXH|1|L1|A|442
8RXH|1|L1|A|443
8RXH|1|L1|C|444
8RXH|1|L1|C|445
*
8RXH|1|L7|G|18
8RXH|1|L7|A|19
Current chains
- Chain L1
- LSUa_rRNA_chain_1
- Chain L7
- 5.8S_rRNA_chain_7
Nearby chains
- Chain L4
- Large subunit ribosomal RNA; LSU rRNA
- Chain LC
- Putative ribosomal protein L1a
- Chain LT
- Putative 60S ribosomal protein L17
- Chain LW
- Putative 60S ribosomal protein L26
- Chain Ll
- Putative 60S ribosomal protein L39
Coloring options: