J3_8RXH_033

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CCACAC*GG*UG

Length

10 nucleotides

Bulged bases

8RXH|1|L8|C|16

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RXH_033 not in the Motif Atlas

Homologous match to J3_8P9A_066

Geometric discrepancy: 0.0899

The information below is about J3_8P9A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_26985.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

7

Unit IDs

8RXH|1|L8|C|13
8RXH|1|L8|C|14
8RXH|1|L8|A|15
8RXH|1|L8|C|16
8RXH|1|L8|A|17
8RXH|1|L8|C|18
*
8RXH|1|L8|G|69
8RXH|1|L8|G|70
*
8RXH|1|L8|U|113
8RXH|1|L8|G|114

Current chains

Chain L8

5S_rRNA_chain_8

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain LD

60S ribosomal protein L11

Chain LN

Putative 60S ribosomal protein L10

Chain LO

Putative 60S ribosomal protein L5

Chain LS

Putative 60S ribosomal protein L21