J3_8RXH_034

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GG*CGC(A2M)AAU*(A2M)GC

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RXH_034 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.1253

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8RXH|1|S1|G|41
8RXH|1|S1|G|42
*
8RXH|1|S1|C|476
8RXH|1|S1|G|477
8RXH|1|S1|C|478
8RXH|1|S1|A2M|479
8RXH|1|S1|A|480
8RXH|1|S1|A|481
8RXH|1|S1|U|482
*
8RXH|1|S1|A2M|512
8RXH|1|S1|G|513
8RXH|1|S1|C|514

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SD

Putative 40S ribosomal protein S9

Chain SP

Putative 40S ribosomal protein S23