J3_8RXH_041
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- UUAUGG*CGAGAU*GCAACA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RXH_041 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.3728
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8RXH|1|S1|U|1635
8RXH|1|S1|U|1636
8RXH|1|S1|A|1637
8RXH|1|S1|U|1638
8RXH|1|S1|G|1639
8RXH|1|S1|G|1640
*
8RXH|1|S1|C|1679
8RXH|1|S1|G|1680
8RXH|1|S1|A|1681
8RXH|1|S1|G|1682
8RXH|1|S1|A|1683
8RXH|1|S1|U|1684
*
8RXH|1|S1|G|1820
8RXH|1|S1|C|1821
8RXH|1|S1|A|1822
8RXH|1|S1|A|1823
8RXH|1|S1|C|1824
8RXH|1|S1|A|1825
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain SC
- Putative 40S ribosomal protein S3
- Chain SF
- 40S ribosomal protein S2
- Chain SL
- Putative 40S ribosomal protein S16
- Chain SM
- Putative ribosomal protein S20
- Chain SS
- Putative ribosomal protein S29
- Chain SV
- Putative 40S ribosomal protein S17
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