J3_8S8D_008
3D structure
- PDB id
- 8S8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- UGGA*UAC*G(7MG)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8S8D_008 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.0777
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8S8D|1|2|U|1167
8S8D|1|2|G|1168
8S8D|1|2|G|1169
8S8D|1|2|A|1170
*
8S8D|1|2|U|1466
8S8D|1|2|A|1467
8S8D|1|2|C|1468
*
8S8D|1|2|G|1572
8S8D|1|2|7MG|1573
8S8D|1|2|A|1574
8S8D|1|2|A|1575
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain F
- KLLA0D10659p
- Chain Q
- Small ribosomal subunit protein uS9
- Chain S
- KLLA0B01562p
- Chain T
- KLLA0A07194p
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
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