J3_8S8F_010
3D structure
- PDB id
- 8S8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.95 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 8S8F|1|2|A|1216, 8S8F|1|2|G|1443, 8S8F|1|2|C|1445
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8S8F_010 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1718
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8S8F|1|2|C|1214
8S8F|1|2|C|1215
8S8F|1|2|A|1216
8S8F|1|2|G|1217
8S8F|1|2|A|1218
8S8F|1|2|C|1219
*
8S8F|1|2|G|1262
8S8F|1|2|G|1263
8S8F|1|2|G|1264
8S8F|1|2|U|1265
8S8F|1|2|G|1266
*
8S8F|1|2|U|1440
8S8F|1|2|U|1441
8S8F|1|2|A|1442
8S8F|1|2|G|1443
8S8F|1|2|A|1444
8S8F|1|2|C|1445
8S8F|1|2|G|1446
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- KLLA0B08173p
- Chain d
- Small ribosomal subunit protein uS14
- Chain f
- Small ribosomal subunit protein eS31
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