J3_8S8H_015
3D structure
- PDB id
- 8S8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CACUG*CGUGCUGG*C(2MG)AG
- Length
- 17 nucleotides
- Bulged bases
- 8S8H|1|2|U|1471, 8S8H|1|2|U|1533, 8S8H|1|2|G|1537
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8S8H_015 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.1452
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8S8H|1|2|C|1468
8S8H|1|2|A|1469
8S8H|1|2|C|1470
8S8H|1|2|U|1471
8S8H|1|2|G|1472
*
8S8H|1|2|C|1531
8S8H|1|2|G|1532
8S8H|1|2|U|1533
8S8H|1|2|G|1534
8S8H|1|2|C|1535
8S8H|1|2|U|1536
8S8H|1|2|G|1537
8S8H|1|2|G|1538
*
8S8H|1|2|C|1569
8S8H|1|2|2MG|1570
8S8H|1|2|A|1571
8S8H|1|2|G|1572
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- KLLA0D10659p
- Chain S
- KLLA0B01562p
- Chain T
- KLLA0A07194p
- Chain Z
- 40S ribosomal protein S25
Coloring options: