J3_8S8I_003

3D structure

PDB id

8S8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGA*UAAUAG*CAUUA

Length

14 nucleotides

Bulged bases

8S8I|1|2|U|863

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8S8I_003 not in the Motif Atlas

Homologous match to J3_8C3A_034

Geometric discrepancy: 0.3067

The information below is about J3_8C3A_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.2

Basepair signature

cWW-tSH-cWW-tHW-cWW-cWW-F

Number of instances in this motif group

7

Unit IDs

8S8I|1|2|U|632
8S8I|1|2|G|633
8S8I|1|2|A|634
*
8S8I|1|2|U|860
8S8I|1|2|A|861
8S8I|1|2|A|862
8S8I|1|2|U|863
8S8I|1|2|A|864
8S8I|1|2|G|865
*
8S8I|1|2|C|961
8S8I|1|2|A|962
8S8I|1|2|U|963
8S8I|1|2|U|964
8S8I|1|2|A|965

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S7

Chain L

KLLA0A10483p

Chain N

KLLA0F18040p

Chain W

Small ribosomal subunit protein uS8

Chain X

KLLA0B11231p

Chain b

40S ribosomal protein S27