J3_8S8K_005
3D structure
- PDB id
- 8S8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8S8K|1|2|C|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8S8K_005 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1071
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.2
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8S8K|1|2|A|880
8S8K|1|2|U|881
8S8K|1|2|C|882
8S8K|1|2|A|883
*
8S8K|1|2|U|927
8S8K|1|2|A|928
8S8K|1|2|A|929
8S8K|1|2|C|930
8S8K|1|2|U|931
8S8K|1|2|A|932
8S8K|1|2|C|933
8S8K|1|2|U|934
8S8K|1|2|G|935
*
8S8K|1|2|C|942
8S8K|1|2|A|943
8S8K|1|2|U|944
8S8K|1|2|U|945
8S8K|1|2|U|946
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- Small ribosomal subunit protein eS1
- Chain O
- Small ribosomal subunit protein uS11
- Chain a
- 40S ribosomal protein S26
Coloring options: