J3_8SCB_007

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

8SCB|1|5|U|2788, 8SCB|1|5|A|2789

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8SCB_007 not in the Motif Atlas

Homologous match to J3_5TBW_009

Geometric discrepancy: 0.0923

The information below is about J3_5TBW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8SCB|1|5|G|2402
8SCB|1|5|A|2403
8SCB|1|5|A|2404
8SCB|1|5|G|2405
*
8SCB|1|5|C|2785
8SCB|1|5|C|2786
8SCB|1|5|A2M|2787
8SCB|1|5|U|2788
8SCB|1|5|A|2789
8SCB|1|5|U|2790
8SCB|1|5|C|2791
*
8SCB|1|5|G|2800
8SCB|1|5|U|2801
8SCB|1|5|C|2802

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain g

60S ribosomal protein L34

Chain j

Ribosomal protein L37

Chain l

eL39