J3_8SCB_018

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

8SCB|1|9|A|1679

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8SCB_018 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1185

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8SCB|1|9|C|1218
8SCB|1|9|C|1219
8SCB|1|9|A|1220
8SCB|1|9|G|1221
*
8SCB|1|9|C|1645
8SCB|1|9|C|1646
8SCB|1|9|A|1647
8SCB|1|9|G|1648
8SCB|1|9|U|1649
8SCB|1|9|A|1650
8SCB|1|9|A|1651
*
8SCB|1|9|U|1673
8SCB|1|9|G|1674
8SCB|1|9|A|1675
8SCB|1|9|U|1676
8SCB|1|9|U|1677
8SCB|1|9|A2M|1678
8SCB|1|9|A|1679
8SCB|1|9|G|1680

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain FF

uS7

Chain QQ

uS9

Chain cc

eS28