J3_8SYL_006
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUA*UAG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- 8SYL|1|A|U|2334, 8SYL|1|A|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8SYL_006 not in the Motif Atlas
- Homologous match to J3_5J7L_045
- Geometric discrepancy: 0.1313
- The information below is about J3_5J7L_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8SYL|1|A|C|2295
8SYL|1|A|U|2296
8SYL|1|A|A|2297
*
8SYL|1|A|U|2321
8SYL|1|A|A|2322
8SYL|1|A|G|2323
*
8SYL|1|A|C|2332
8SYL|1|A|A|2333
8SYL|1|A|U|2334
8SYL|1|A|A|2335
8SYL|1|A|A|2336
8SYL|1|A|G|2337
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L5
- Chain Q
- 50S ribosomal protein L18
- Chain Y
- 50S ribosomal protein L27
- Chain x
- Transfer RNA; tRNA
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