J3_8SYL_010
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 8SYL|1|a|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8SYL_010 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.0652
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8SYL|1|a|C|826
8SYL|1|a|U|827
8SYL|1|a|U|828
8SYL|1|a|G|829
*
8SYL|1|a|C|857
8SYL|1|a|G|858
8SYL|1|a|G|859
8SYL|1|a|A|860
8SYL|1|a|G|861
*
8SYL|1|a|C|868
8SYL|1|a|G|869
8SYL|1|a|U|870
8SYL|1|a|U|871
8SYL|1|a|A|872
8SYL|1|a|A|873
8SYL|1|a|G|874
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain h
- 30S ribosomal protein S8
- Chain u
- 30S ribosomal protein S21
Coloring options: