3D structure

PDB id
8SYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
8SYL|1|a|U|1240, 8SYL|1|a|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8SYL_018 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1423
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

8SYL|1|a|C|1237
8SYL|1|a|A|1238
8SYL|1|a|A|1239
8SYL|1|a|U|1240
8SYL|1|a|G|1241
*
8SYL|1|a|C|1296
8SYL|1|a|G|1297
8SYL|1|a|U|1298
8SYL|1|a|A|1299
8SYL|1|a|G|1300
8SYL|1|a|U|1301
8SYL|1|a|C|1302
8SYL|1|a|C|1303
*
8SYL|1|a|G|1334
8SYL|1|a|U|1335
8SYL|1|a|C|1336
8SYL|1|a|G|1337

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain g
30S ribosomal protein S7
Chain m
30S ribosomal protein S13

Coloring options:


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