J3_8SYL_025

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8SYL_025 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0591

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8SYL|1|A|G|1424
8SYL|1|A|G|1425
8SYL|1|A|G|1426
8SYL|1|A|A|1427
8SYL|1|A|C|1428
8SYL|1|A|G|1429
*
8SYL|1|A|C|1564
8SYL|1|A|C|1565
*
8SYL|1|A|G|1568
8SYL|1|A|A|1569
8SYL|1|A|A|1570
8SYL|1|A|A|1571
8SYL|1|A|A|1572
8SYL|1|A|G|1573
8SYL|1|A|C|1574

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2