J3_8T2X_043

3D structure

PDB id

8T2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

8T2X|1|B5|U|1473, 8T2X|1|B5|G|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T2X_043 not in the Motif Atlas

Homologous match to J3_8C3A_044

Geometric discrepancy: 0.115

The information below is about J3_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.4

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F

Number of instances in this motif group

5

Unit IDs

8T2X|1|B5|C|1470
8T2X|1|B5|A|1471
8T2X|1|B5|C|1472
8T2X|1|B5|U|1473
8T2X|1|B5|G|1474
*
8T2X|1|B5|C|1533
8T2X|1|B5|G|1534
8T2X|1|B5|U|1535
8T2X|1|B5|G|1536
8T2X|1|B5|C|1537
8T2X|1|B5|U|1538
8T2X|1|B5|G|1539
8T2X|1|B5|G|1540
*
8T2X|1|B5|C|1571
8T2X|1|B5|G|1572
8T2X|1|B5|A|1573
8T2X|1|B5|G|1574

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Rps5p

Chain BS

40S ribosomal protein S18-A

Chain BT

40S ribosomal protein S19-A

Chain BZ

RPS25A isoform 1