J3_8T30_037

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8T30|1|B5|A|1217, 8T30|1|B5|G|1445, 8T30|1|B5|C|1447

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T30_037 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1968

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8T30|1|B5|C|1215
8T30|1|B5|C|1216
8T30|1|B5|A|1217
8T30|1|B5|G|1218
8T30|1|B5|A|1219
8T30|1|B5|C|1220
*
8T30|1|B5|G|1263
8T30|1|B5|G|1264
8T30|1|B5|G|1265
8T30|1|B5|U|1266
8T30|1|B5|G|1267
*
8T30|1|B5|U|1442
8T30|1|B5|U|1443
8T30|1|B5|A|1444
8T30|1|B5|G|1445
8T30|1|B5|A|1446
8T30|1|B5|C|1447
8T30|1|B5|G|1448

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BK

40S ribosomal protein S10-A

Chain Bd

RPS29A isoform 1

Chain Bf

Ubiquitin-40S ribosomal protein S31