J3_8T3A_006

3D structure

PDB id

8T3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AUGAAAAGAAC*GAGUGAAAAAGUACG*CU

Length

28 nucleotides

Bulged bases

8T3A|1|A1|A|398, 8T3A|1|A1|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T3A_006 not in the Motif Atlas

Homologous match to J3_8C3A_049

Geometric discrepancy: 0.1026

The information below is about J3_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91149.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8T3A|1|A1|A|369
8T3A|1|A1|U|370
8T3A|1|A1|G|371
8T3A|1|A1|A|372
8T3A|1|A1|A|373
8T3A|1|A1|A|374
8T3A|1|A1|A|375
8T3A|1|A1|G|376
8T3A|1|A1|A|377
8T3A|1|A1|A|378
8T3A|1|A1|C|379
*
8T3A|1|A1|G|390
8T3A|1|A1|A|391
8T3A|1|A1|G|392
8T3A|1|A1|U|393
8T3A|1|A1|G|394
8T3A|1|A1|A|395
8T3A|1|A1|A|396
8T3A|1|A1|A|397
8T3A|1|A1|A|398
8T3A|1|A1|A|399
8T3A|1|A1|G|400
8T3A|1|A1|U|401
8T3A|1|A1|A|402
8T3A|1|A1|C|403
8T3A|1|A1|G|404
*
8T3A|1|A4|C|19
8T3A|1|A4|U|20

Current chains

Chain A1

25S rRNA

Chain A4

5.8 S rRNA

Nearby chains

Chain AC

RPL4A isoform 1

Chain AP

60S ribosomal protein L17-A

Chain AY

60S ribosomal protein L26-A

Chain Al

60S ribosomal protein L39