J3_8T3A_008
3D structure
- PDB id
- 8T3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8T3A|1|A1|A|817, 8T3A|1|A1|G|924, 8T3A|1|A1|A|925
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3A_008 not in the Motif Atlas
- Homologous match to J3_8P9A_049
- Geometric discrepancy: 0.0813
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8T3A|1|A1|U|814
8T3A|1|A1|G|815
8T3A|1|A1|A|816
8T3A|1|A1|A|817
8T3A|1|A1|C|818
8T3A|1|A1|U|819
8T3A|1|A1|A|820
*
8T3A|1|A1|U|905
8T3A|1|A1|A|906
8T3A|1|A1|G|907
*
8T3A|1|A1|C|923
8T3A|1|A1|G|924
8T3A|1|A1|A|925
8T3A|1|A1|A|926
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
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