J3_8T3B_041
3D structure
- PDB id
- 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- UAAC*GGACUA*UGGAAGUU(PSU)G
- Length
- 20 nucleotides
- Bulged bases
- 8T3B|1|B5|U|1390, 8T3B|1|B5|U|1413, 8T3B|1|B5|U|1414
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3B_041 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.5111
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8T3B|1|B5|U|1335
8T3B|1|B5|A|1336
8T3B|1|B5|A|1337
8T3B|1|B5|C|1338
*
8T3B|1|B5|G|1386
8T3B|1|B5|G|1387
8T3B|1|B5|A|1388
8T3B|1|B5|C|1389
8T3B|1|B5|U|1390
8T3B|1|B5|A|1391
*
8T3B|1|B5|U|1407
8T3B|1|B5|G|1408
8T3B|1|B5|G|1409
8T3B|1|B5|A|1410
8T3B|1|B5|A|1411
8T3B|1|B5|G|1412
8T3B|1|B5|U|1413
8T3B|1|B5|U|1414
8T3B|1|B5|PSU|1415
8T3B|1|B5|G|1416
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BF
- Rps5p
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BR
- 40S ribosomal protein S17-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
- Chain Bg
- Guanine nucleotide-binding protein subunit beta-like protein
Coloring options: