J3_8T3D_034
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8T3D|1|B5|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3D_034 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1075
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76375.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8T3D|1|B5|A|881
8T3D|1|B5|U|882
8T3D|1|B5|C|883
8T3D|1|B5|A|884
*
8T3D|1|B5|U|928
8T3D|1|B5|A|929
8T3D|1|B5|A|930
8T3D|1|B5|C|931
8T3D|1|B5|U|932
8T3D|1|B5|A|933
8T3D|1|B5|C|934
8T3D|1|B5|U|935
8T3D|1|B5|G|936
*
8T3D|1|B5|C|943
8T3D|1|B5|A|944
8T3D|1|B5|U|945
8T3D|1|B5|U|946
8T3D|1|B5|U|947
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain Ap
- 60S ribosomal protein L43-A
- Chain BB
- RPS1A isoform 1
- Chain BN
- 40S ribosomal protein S13
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- RPS26B isoform 1
Coloring options: