J3_8T3D_039
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 8T3D|1|B5|A|1217, 8T3D|1|B5|G|1445, 8T3D|1|B5|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3D_039 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1921
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8T3D|1|B5|C|1215
8T3D|1|B5|C|1216
8T3D|1|B5|A|1217
8T3D|1|B5|G|1218
8T3D|1|B5|A|1219
8T3D|1|B5|C|1220
*
8T3D|1|B5|G|1263
8T3D|1|B5|G|1264
8T3D|1|B5|G|1265
8T3D|1|B5|U|1266
8T3D|1|B5|G|1267
*
8T3D|1|B5|U|1442
8T3D|1|B5|U|1443
8T3D|1|B5|A|1444
8T3D|1|B5|G|1445
8T3D|1|B5|A|1446
8T3D|1|B5|C|1447
8T3D|1|B5|G|1448
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BK
- 40S ribosomal protein S10-A
- Chain Bd
- RPS29A isoform 1
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
- Chain DC
- Elongation factor 2
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