3D structure

PDB id
8T3E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
AGAUUAAG*CGCGCAAAU*AG(PSU)
Length
20 nucleotides
Bulged bases
8T3E|1|B5|A|47
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8T3E_028 not in the Motif Atlas
Homologous match to J3_8C3A_083
Geometric discrepancy: 0.0934
The information below is about J3_8C3A_083
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.2
Basepair signature
cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW
Number of instances in this motif group
5

Unit IDs

8T3E|1|B5|A|41
8T3E|1|B5|G|42
8T3E|1|B5|A|43
8T3E|1|B5|U|44
8T3E|1|B5|U|45
8T3E|1|B5|A|46
8T3E|1|B5|A|47
8T3E|1|B5|G|48
*
8T3E|1|B5|C|431
8T3E|1|B5|G|432
8T3E|1|B5|C|433
8T3E|1|B5|G|434
8T3E|1|B5|C|435
8T3E|1|B5|A|436
8T3E|1|B5|A|437
8T3E|1|B5|A|438
8T3E|1|B5|U|439
*
8T3E|1|B5|A|464
8T3E|1|B5|G|465
8T3E|1|B5|PSU|466

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BJ
40S ribosomal protein S9-A
Chain BX
40S ribosomal protein S23-A
Chain DC
Elongation factor 2

Coloring options:


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