3D structure

PDB id
8T3E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
AUCA*UAACUACUG*CAUUU
Length
18 nucleotides
Bulged bases
8T3E|1|B5|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8T3E_033 not in the Motif Atlas
Homologous match to J3_8P9A_074
Geometric discrepancy: 0.117
The information below is about J3_8P9A_074
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76375.1
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
Number of instances in this motif group
1

Unit IDs

8T3E|1|B5|A|881
8T3E|1|B5|U|882
8T3E|1|B5|C|883
8T3E|1|B5|A|884
*
8T3E|1|B5|U|928
8T3E|1|B5|A|929
8T3E|1|B5|A|930
8T3E|1|B5|C|931
8T3E|1|B5|U|932
8T3E|1|B5|A|933
8T3E|1|B5|C|934
8T3E|1|B5|U|935
8T3E|1|B5|G|936
*
8T3E|1|B5|C|943
8T3E|1|B5|A|944
8T3E|1|B5|U|945
8T3E|1|B5|U|946
8T3E|1|B5|U|947

Current chains

Chain B5
18S rRNA

Nearby chains

Chain AA
60S ribosomal protein L2-A
Chain Ap
60S ribosomal protein L43-A
Chain BB
RPS1A isoform 1
Chain BN
40S ribosomal protein S13
Chain BO
40S ribosomal protein S14-A
Chain Ba
RPS26B isoform 1

Coloring options:


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