J3_8T3F_013
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8T3F|1|A1|U|1840, 8T3F|1|A1|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T3F_013 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.0911
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8T3F|1|A1|G|1488
8T3F|1|A1|A|1489
8T3F|1|A1|A|1490
8T3F|1|A1|A|1491
*
8T3F|1|A1|U|1837
8T3F|1|A1|G|1838
8T3F|1|A1|A|1839
8T3F|1|A1|U|1840
8T3F|1|A1|A|1841
8T3F|1|A1|A|1842
8T3F|1|A1|C|1843
*
8T3F|1|A1|G|1852
8T3F|1|A1|U|1853
8T3F|1|A1|C|1854
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
Coloring options: