J3_8T4S_006

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

8T4S|1|2|G|1274, 8T4S|1|2|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T4S_006 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1019

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8T4S|1|2|C|1272
8T4S|1|2|C|1273
8T4S|1|2|G|1274
8T4S|1|2|G|1275
8T4S|1|2|A|1276
8T4S|1|2|C|1277
*
8T4S|1|2|G|1320
8T4S|1|2|G|1321
8T4S|1|2|G|1322
8T4S|1|2|U|1323
8T4S|1|2|G|1324
*
8T4S|1|2|U|1504
8T4S|1|2|U|1505
8T4S|1|2|A|1506
8T4S|1|2|G|1507
8T4S|1|2|A|1508
8T4S|1|2|U|1509
8T4S|1|2|G|1510

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a