3D structure

PDB id
8T5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
8T5D|1|v|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8T5D_011 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.0867
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

8T5D|1|v|C|826
8T5D|1|v|U|827
8T5D|1|v|U|828
8T5D|1|v|G|829
*
8T5D|1|v|C|857
8T5D|1|v|G|858
8T5D|1|v|G|859
8T5D|1|v|A|860
8T5D|1|v|G|861
*
8T5D|1|v|C|868
8T5D|1|v|G|869
8T5D|1|v|U|870
8T5D|1|v|U|871
8T5D|1|v|A|872
8T5D|1|v|A|873
8T5D|1|v|G|874

Current chains

Chain v
16s RNA

Nearby chains

Chain a
30S ribosomal protein S2
Chain g
30S ribosomal protein S8
Chain t
30S ribosomal protein S21 (Fragment)

Coloring options:


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