J3_8T5D_018

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8T5D|1|v|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T5D_018 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1581

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8T5D|1|v|C|1237
8T5D|1|v|A|1238
8T5D|1|v|A|1239
8T5D|1|v|U|1240
8T5D|1|v|G|1241
*
8T5D|1|v|C|1296
8T5D|1|v|G|1297
8T5D|1|v|U|1298
8T5D|1|v|A|1299
8T5D|1|v|G|1300
8T5D|1|v|U|1301
8T5D|1|v|C|1302
8T5D|1|v|C|1303
*
8T5D|1|v|G|1334
8T5D|1|v|U|1335
8T5D|1|v|C|1336
8T5D|1|v|G|1337

Current chains

Chain v

16s RNA

Nearby chains

Chain f

30S ribosomal protein S7

Chain l

30S ribosomal protein S13