J3_8T5D_020
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8T5D|1|B|U|448, 8T5D|1|B|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T5D_020 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1234
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8T5D|1|B|C|32
8T5D|1|B|C|33
8T5D|1|B|U|34
8T5D|1|B|G|35
*
8T5D|1|B|C|445
8T5D|1|B|G|446
8T5D|1|B|A|447
8T5D|1|B|U|448
8T5D|1|B|A|449
8T5D|1|B|G|450
8T5D|1|B|U|451
8T5D|1|B|G|452
8T5D|1|B|A|453
8T5D|1|B|A|454
8T5D|1|B|C|455
8T5D|1|B|C|456
8T5D|1|B|A|457
8T5D|1|B|G|458
8T5D|1|B|U|459
8T5D|1|B|A|460
8T5D|1|B|C|461
*
8T5D|1|B|G|468
8T5D|1|B|G|469
8T5D|1|B|A|470
8T5D|1|B|A|471
8T5D|1|B|A|472
8T5D|1|B|G|473
Current chains
- Chain B
- 23S RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
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