J3_8T5H_003

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T5H_003 not in the Motif Atlas

Homologous match to J3_8VTW_002

Geometric discrepancy: 0.0823

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8T5H|1|B|C|698
8T5H|1|B|A|699
8T5H|1|B|G|700
*
8T5H|1|B|C|732
8T5H|1|B|G|733
8T5H|1|B|A|734
8T5H|1|B|A|735
8T5H|1|B|C|736
*
8T5H|1|B|G|760
8T5H|1|B|A|761
8T5H|1|B|U|762
8T5H|1|B|G|763

Current chains

Chain B

23S

Nearby chains

Chain C

50S ribosomal protein L2