J3_8T5H_006

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8T5H|1|B|C|1607, 8T5H|1|B|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T5H_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.362

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8T5H|1|B|C|1306
8T5H|1|B|A|1307
8T5H|1|B|A|1308
8T5H|1|B|G|1309
*
8T5H|1|B|C|1605
8T5H|1|B|C|1606
8T5H|1|B|C|1607
8T5H|1|B|A|1608
8T5H|1|B|A|1609
8T5H|1|B|A|1610
8T5H|1|B|C|1611
*
8T5H|1|B|G|1620
8T5H|1|B|U|1621
8T5H|1|B|G|1622

Current chains

Chain B

23S

Nearby chains

Chain 2

50S ribosomal protein L34