J3_8T5H_006
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 8T5H|1|B|C|1607, 8T5H|1|B|A|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T5H_006 not in the Motif Atlas
- Homologous match to J3_5J7L_042
- Geometric discrepancy: 0.362
- The information below is about J3_5J7L_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19545.2
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
8T5H|1|B|C|1306
8T5H|1|B|A|1307
8T5H|1|B|A|1308
8T5H|1|B|G|1309
*
8T5H|1|B|C|1605
8T5H|1|B|C|1606
8T5H|1|B|C|1607
8T5H|1|B|A|1608
8T5H|1|B|A|1609
8T5H|1|B|A|1610
8T5H|1|B|C|1611
*
8T5H|1|B|G|1620
8T5H|1|B|U|1621
8T5H|1|B|G|1622
Current chains
- Chain B
- 23S
Nearby chains
- Chain 2
- 50S ribosomal protein L34
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