3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CAAG*CCCAAAC*GUG
Length
14 nucleotides
Bulged bases
8T5H|1|B|C|1607, 8T5H|1|B|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8T5H_006 not in the Motif Atlas
Homologous match to J3_5J7L_042
Geometric discrepancy: 0.362
The information below is about J3_5J7L_042
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_19545.2
Basepair signature
cWW-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
6

Unit IDs

8T5H|1|B|C|1306
8T5H|1|B|A|1307
8T5H|1|B|A|1308
8T5H|1|B|G|1309
*
8T5H|1|B|C|1605
8T5H|1|B|C|1606
8T5H|1|B|C|1607
8T5H|1|B|A|1608
8T5H|1|B|A|1609
8T5H|1|B|A|1610
8T5H|1|B|C|1611
*
8T5H|1|B|G|1620
8T5H|1|B|U|1621
8T5H|1|B|G|1622

Current chains

Chain B
23S

Nearby chains

Chain 2
50S ribosomal protein L34

Coloring options:


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