J3_8T5H_019

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T5H_019 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.088

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8T5H|1|B|G|30
8T5H|1|B|C|31
*
8T5H|1|B|G|474
8T5H|1|B|C|475
8T5H|1|B|G|476
8T5H|1|B|A|477
8T5H|1|B|A|478
8T5H|1|B|A|479
8T5H|1|B|A|480
8T5H|1|B|G|481
*
8T5H|1|B|C|509
8T5H|1|B|C|510

Current chains

Chain B

23S

Nearby chains

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24