3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
8T5H|1|B|A|504, 8T5H|1|B|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8T5H_020 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.1367
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8T5H|1|B|G|30
8T5H|1|B|C|31
*
8T5H|1|B|G|474
8T5H|1|B|C|475
8T5H|1|B|G|476
8T5H|1|B|A|477
8T5H|1|B|A|478
8T5H|1|B|A|479
8T5H|1|B|A|480
8T5H|1|B|G|481
8T5H|1|B|A|482
8T5H|1|B|A|483
8T5H|1|B|C|484
*
8T5H|1|B|G|496
8T5H|1|B|A|497
8T5H|1|B|G|498
8T5H|1|B|U|499
8T5H|1|B|G|500
8T5H|1|B|A|501
8T5H|1|B|A|502
8T5H|1|B|A|503
8T5H|1|B|A|504
8T5H|1|B|A|505
8T5H|1|B|G|506
8T5H|1|B|A|507
8T5H|1|B|A|508
8T5H|1|B|C|509
8T5H|1|B|C|510

Current chains

Chain B
23S

Nearby chains

Chain Q
50S ribosomal protein L20
Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


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