J3_8T5H_033
3D structure
- PDB id
- 8T5H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 8T5H|1|v|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8T5H_033 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.1549
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8T5H|1|v|U|672
8T5H|1|v|A|673
*
8T5H|1|v|U|717
8T5H|1|v|A|718
8T5H|1|v|C|719
8T5H|1|v|C|720
8T5H|1|v|G|721
8T5H|1|v|G|722
8T5H|1|v|U|723
8T5H|1|v|G|724
8T5H|1|v|G|725
*
8T5H|1|v|C|732
8T5H|1|v|G|733
8T5H|1|v|G|734
Current chains
- Chain v
- 16S
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain e
- 30S ribosomal protein S6, non-modified isoform
- Chain j
- 30S ribosomal protein S11
- Chain n
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S18
Coloring options: