J3_8T8B_039

3D structure

PDB id

8T8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

8T8B|1|1A|U|504, 8T8B|1|1A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T8B_039 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0365

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8T8B|1|1A|G|30
8T8B|1|1A|C|31
*
8T8B|1|1A|G|474
8T8B|1|1A|U|475
8T8B|1|1A|G|476
8T8B|1|1A|A|477
8T8B|1|1A|A|478
8T8B|1|1A|A|479
8T8B|1|1A|A|480
8T8B|1|1A|G|481
8T8B|1|1A|A|482
8T8B|1|1A|A|483
8T8B|1|1A|C|484
*
8T8B|1|1A|G|496
8T8B|1|1A|A|497
8T8B|1|1A|G|498
8T8B|1|1A|U|499
8T8B|1|1A|G|500
8T8B|1|1A|A|501
8T8B|1|1A|A|502
8T8B|1|1A|A|503
8T8B|1|1A|U|504
8T8B|1|1A|A|505
8T8B|1|1A|G|506
8T8B|1|1A|A|507
8T8B|1|1A|G|508
8T8B|1|1A|C|509
8T8B|1|1A|C|510

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22

Chain 1Y

50S ribosomal protein L24