J3_8T8C_054

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8T8C|1|1a|U|1212, 8T8C|1|1a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T8C_054 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.153

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8T8C|1|1a|C|990
8T8C|1|1a|U|991
8T8C|1|1a|U|992
8T8C|1|1a|G|993
8T8C|1|1a|A|994
8T8C|1|1a|C|995
8T8C|1|1a|A|996
8T8C|1|1a|U|997
*
8T8C|1|1a|A|1044
8T8C|1|1a|C|1045
8T8C|1|1a|A|1046
8T8C|1|1a|G|1047
*
8T8C|1|1a|C|1210
8T8C|1|1a|U|1211
8T8C|1|1a|U|1212
8T8C|1|1a|A|1213
8T8C|1|1a|C|1214
8T8C|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z