J3_8T8C_057

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

8T8C|1|2A|U|504, 8T8C|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8T8C_057 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0639

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8T8C|1|2A|G|30
8T8C|1|2A|C|31
*
8T8C|1|2A|G|474
8T8C|1|2A|U|475
8T8C|1|2A|G|476
8T8C|1|2A|A|477
8T8C|1|2A|A|478
8T8C|1|2A|A|479
8T8C|1|2A|A|480
8T8C|1|2A|G|481
8T8C|1|2A|A|482
8T8C|1|2A|A|483
8T8C|1|2A|C|484
*
8T8C|1|2A|G|496
8T8C|1|2A|A|497
8T8C|1|2A|G|498
8T8C|1|2A|U|499
8T8C|1|2A|G|500
8T8C|1|2A|A|501
8T8C|1|2A|A|502
8T8C|1|2A|A|503
8T8C|1|2A|U|504
8T8C|1|2A|A|505
8T8C|1|2A|G|506
8T8C|1|2A|A|507
8T8C|1|2A|G|508
8T8C|1|2A|C|509
8T8C|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24