J3_8UD6_027

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8UD6|1|2a|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD6_027 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0677

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8UD6|1|2a|C|826
8UD6|1|2a|U|827
8UD6|1|2a|A|828
8UD6|1|2a|G|829
*
8UD6|1|2a|C|857
8UD6|1|2a|G|858
8UD6|1|2a|A|859
8UD6|1|2a|A|860
8UD6|1|2a|G|861
*
8UD6|1|2a|C|868
8UD6|1|2a|G|869
8UD6|1|2a|U|870
8UD6|1|2a|U|871
8UD6|1|2a|A|872
8UD6|1|2a|A|873
8UD6|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8