J3_8UD6_052

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8UD6|1|1a|U|1212, 8UD6|1|1a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD6_052 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.143

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

8UD6|1|1a|C|990
8UD6|1|1a|U|991
8UD6|1|1a|U|992
8UD6|1|1a|G|993
8UD6|1|1a|A|994
8UD6|1|1a|C|995
8UD6|1|1a|A|996
8UD6|1|1a|U|997
*
8UD6|1|1a|A|1044
8UD6|1|1a|C|1045
8UD6|1|1a|A|1046
8UD6|1|1a|G|1047
*
8UD6|1|1a|C|1210
8UD6|1|1a|U|1211
8UD6|1|1a|U|1212
8UD6|1|1a|A|1213
8UD6|1|1a|C|1214
8UD6|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z