J3_8UD7_038

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8UD7|1|1A|U|448, 8UD7|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UD7_038 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0472

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8UD7|1|1A|C|32
8UD7|1|1A|U|33
8UD7|1|1A|C|34
8UD7|1|1A|G|35
*
8UD7|1|1A|C|445
8UD7|1|1A|G|446
8UD7|1|1A|A|447
8UD7|1|1A|U|448
8UD7|1|1A|A|449
8UD7|1|1A|G|450
8UD7|1|1A|C|451
8UD7|1|1A|G|452
8UD7|1|1A|C|453
8UD7|1|1A|A|454
8UD7|1|1A|C|455
8UD7|1|1A|C|456
8UD7|1|1A|A|457
8UD7|1|1A|G|458
8UD7|1|1A|U|459
8UD7|1|1A|A|460
8UD7|1|1A|C|461
*
8UD7|1|1A|G|468
8UD7|1|1A|G|469
8UD7|1|1A|A|470
8UD7|1|1A|A|471
8UD7|1|1A|A|472
8UD7|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23