J3_8UJ9_011

3D structure

PDB id

8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8UJ9|1|L5|A|2396, 8UJ9|1|L5|U|2398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UJ9_011 not in the Motif Atlas

Homologous match to J3_8P9A_053

Geometric discrepancy: 0.1663

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.1

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8UJ9|1|L5|C|2393
8UJ9|1|L5|G|2394
8UJ9|1|L5|A|2395
8UJ9|1|L5|A|2396
8UJ9|1|L5|G|2397
8UJ9|1|L5|U|2398
8UJ9|1|L5|G|2399
*
8UJ9|1|L5|C|2805
8UJ9|1|L5|A|2806
8UJ9|1|L5|A|2807
*
8UJ9|1|L5|U|2819
8UJ9|1|L5|C|2820
8UJ9|1|L5|U|2821
8UJ9|1|L5|G|2822

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34